some code in ru_thread_control, still need to remove redundant code in ru_thread, add the state to ru struct, all ru_thread changes still need to be done

Summary of changes:

- minor changes in RA code (functionality not changed, only notation)
- automatic indentation of some files (with indent -kr)
- bugfixes for TDD in RRU (IF4p5) and timing statistics of fronthaul and
  compression

changing of notation for Random-Access procedure to match documentation. Function remains the same. Indentation (-kr) run on all files in LAYER2/MAC

Summary of changes:
- fix a bug with Timing Advance.
  This should improve the stability of the connection
  (for now, only the scenario with one connected UE works).
- use RRC Release 14.3
- add some T tracers, minor fixes for T

Conflicts:
	common/utils/T/.gitignore
	common/utils/T/tracer/Makefile

Sometimes when the user does ctrl+c to quit, it may not quit
if nothing comes on the socket. Closing the socket in the
signal handler fixes this.

Do not link the X stuff for tracers not needing it.

Later on, use this file with gtkwave.
To be used to check realtime behaviour of the system.

This tracer extracts output subframes generated by the eNodeB,
so they can be analyzed with some external tools.

This tracer extracts the content of a buffer field of an event
that was previously saved using the tracer 'record'.

For example, to extract the channel estimation done in
frame 924 and subframe 2 as saved in the file input_record.raw
and to store it in the file output.raw, do:

./extract -d ../T_messages.txt -o output.raw input_record.raw ENB_PHY_UL_CHANNEL_ESTIMATE chest_t -f frame 924 -f subframe 2

- remove global variables in the function lte_est_timing_advance_pusch
- do the smoothing logic that was in lte_est_timing_advance_pusch
  in rx_sdu (is it necessary? is it correct?)
- put back the value 100 in prach_procedures for the test on prach energy
- change the value of timing_advance_update

  it was:

     timing_advance_update                  = sync_pos - eNB->frame_parms.nb_prefix_samples/4; //to check

  it is now:

     timing_advance_update                  = sync_pos; // - eNB->frame_parms.nb_prefix_samples/4; //to check

  this should be checked somehow. The computation looked suspicious. Maybe
  the new one is wrong.

Conflicts:
	openair1/PHY/CODING/rate_matching.c
	openair1/PHY/LTE_REFSIG/primary_synch.h
	openair2/LAYER2/layer2_top.c
	openair2/RRC/LITE/rrc_config.c

just a quick fix before merge, the real solution
is to disable pusch scheduling in the prach, to be
done later

- compile with warning enabled (changes in CMakeLists.txt)
- remove warnings that were present

- allocate memory, memory on stack does not survive the function
- avoid uint32_t, use a char buffer, for endianness neutrality

basically the T_xx variables are int, not uint